Public tools


A web-based tool to evaluate the significance of intersections among sets. Also produces Venn diagrams.

Useful sites

  • Addgene – The non-profit plasmid repository.
  • BioJupies – User-friendly, interactive analysis notebooks for RNA-seq data.
  • Bits of DNA – Lior Pachter’s computational biology blog
  • Cancerrxgene – Genomics of Drug Sensitivity in Cancer.
  • cBioPortal – Visualization, analysis and download of large-scale cancer genomics data sets.
  • ChIP-Enrich – Gene set enrichment testing.
  • ChromHMM – Chromatin state discovery and characterization.
  • Cistrome – integrative analysis pipelines for genome regulation.
  • CistromeCancer – Predicted transcription factor targets and enhancer profiles in cancers.
  • CiteAb – The Antibody Search Engine.
  • DAVID – Database for Annotation, Visualization and Integrated Discovery.
  • DeepBlue – Epigenomic Data Server.
  • Enrichr – Interactive and collaborative gene list enrichment analysis tool.
  • ExpressAnalyst – a unified platform for gene expression data analysis.
  • IHEC – International Human Epigenome Consortium.
  • LincsCloud – Catalog of gene-expression data collected from human cells treated with chemical compounds and genetic reagents.
  • Morpheus – matrix visualization and analysis software for gene expression data.
  • Pan-Cancer Atlas – From the TCGA consortium.
  • Reactome Icon Library and Servier SMART – Icons and graphical elements.
  • RNA-Seqlopedia – Everything about RNA-Seq.
  • UALCAN – Cancer transcriptome web portal.